rs33214533 SNP Detail

Summary

• ID
  rs33214533
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56784866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGC TTCCAGTGGC CATTCATCCC
  Y
  TCTCAGATCC CCGCTGTGTT AAATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39507816	mCV22729181	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss145807324	ENSMUSSNP3123817	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33214533					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56784866 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9362	CpG island 9362	1107 bp distal
Gm9258	predicted gene 9258	1422 bp upstream
Gm32822	predicted gene, 32822	within coordinates
Ptprs	protein tyrosine phosphatase receptor type S	1386 bp upstream
Rr529099	regulatory region 529099	893 bp distal
Rr529100	regulatory region 529100	1394 bp distal
Rr529101	regulatory region 529101	261 bp proximal
Rr529102	regulatory region 529102	1452 bp proximal
Rr529103	regulatory region 529103	1743 bp proximal
Tssr148809	transcription start site region 148809	1406 bp upstream
Tssr148810	transcription start site region 148810	1386 bp upstream
Tssr148811	transcription start site region 148811	1373 bp upstream
Tssr148812	transcription start site region 148812	1349 bp upstream