rs33214913 SNP Detail

Summary

• ID
  rs33214913
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:73143387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCC GCCTCGGCCG AGGAGGCAGA
  S
  TTAGCCTCCT TGATTGGCCG TAAGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39508572	mCV23494933	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss145925136	ENSMUSSNP4086330	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss325448128	CHEV_17_73185732	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33214913					SNP	G	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:73143387 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9486	CpG island 9486	within coordinates
Rr335920	regulatory region 335920	1387 bp distal
Rr340175	regulatory region 340175	within coordinates
Rr405431	regulatory region 405431	within coordinates
Tssr5197	transcription start site region 5197	237 bp upstream
Tssr145775	transcription start site region 145775	264 bp upstream
Tssr145776	transcription start site region 145776	286 bp upstream
Tssr145777	transcription start site region 145777	332 bp upstream
Tssr145778	transcription start site region 145778	1161 bp upstream
Tssr145779	transcription start site region 145779	1232 bp upstream
Tssr145780	transcription start site region 145780	1652 bp upstream
Tssr149306	transcription start site region 149306	1077 bp downstream
Ypel5	yippee like 5	236 bp upstream