rs33215165 SNP Detail

Summary

• ID
  rs33215165
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156133605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTAATTC CTAGACAAAA
  GTTTGTGCCT CCCATCACAT CAAGTGAATA AACCCAGTGT GTTGGGTGAA TGATGAGACG
  GTACAGAGAA CTCTGTGACT GGGAAGGGTA AGACAAGGCC TTTGGATAGG AGCAGGTCAG
  CCTTAAGGAG GAAGACAGGT CTGTGGATTG ACTGACTGAC AGCAAAGAAA GGCCAAATAT
  R
  GGCATCATGT CTATCAATTC TACCCCTACT GAATCAACAG GAGAAGAAAA AAAAAATCCA
  AAAAGTTCTG TAGGGTGGAG AGAAATCCTG GAATGAGAAA CTCATGCCAC TCTAGAGGAC
  AGGCTGCAAA GATGGAAGAA TCCAGGAGTG CCTGGAGATC CCTTCCCAAC CGAGAAAAGG
  AAAGCTCCCA GGAAAAGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46786623	NES10987957	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G			G	G	A
ss148124993	ENSMUSSNP644935	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G				G		A
ss321444911	CHEV_4_155423257	CHEVERUD	SCREENING_POP	f	SNP								A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs33215165					SNP	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46786623	NES10987957	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156133605 () rs orientation: forward

Symbol	Name	Function Class
Rr93557	regulatory region 93557	1196 bp proximal
Rr106662	regulatory region 106662	584 bp proximal
Tssr44999	transcription start site region 44999	1176 bp upstream
Tssr45000	transcription start site region 45000	1317 bp downstream
Tssr45001	transcription start site region 45001	1350 bp downstream
Tssr45002	transcription start site region 45002	1585 bp downstream
Tssr45003	transcription start site region 45003	1614 bp downstream
Tssr45004	transcription start site region 45004	1637 bp downstream
Ttll10	tubulin tyrosine ligase-like family, member 10	within coordinates