rs33215168 SNP Detail

Summary

• ID
  rs33215168
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156133713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCTATCAA TTCTACCCCT ACTGAATCAA CAGGAGAAGA
  AAAAAAAAAT CCAAAAAGTT CTGTAGGGTG GAGAGAAATC CTGGAATGAG AAACTCATGC
  Y
  ACTCTAGAGG ACAGGCTGCA AAGATGGAAG AATCCAGGAG TGCCTGGAGA TCCCTTCCCA
  ACCGAGAAAA GGAAAGCTCC CAGGAAAAGG CTGAGATAGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46786626	NES10987958	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33215168					SNP	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46786626	NES10987958	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156133713 () rs orientation: forward

Symbol	Name	Function Class
Rr93557	regulatory region 93557	1088 bp proximal
Rr106662	regulatory region 106662	476 bp proximal
Tssr44999	transcription start site region 44999	1284 bp upstream
Tssr45000	transcription start site region 45000	1209 bp downstream
Tssr45001	transcription start site region 45001	1242 bp downstream
Tssr45002	transcription start site region 45002	1477 bp downstream
Tssr45003	transcription start site region 45003	1506 bp downstream
Tssr45004	transcription start site region 45004	1529 bp downstream
Ttll10	tubulin tyrosine ligase-like family, member 10	within coordinates