rs33215657 SNP Detail

Summary

• ID
  rs33215657
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156135890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGCCGCC ATGTAGTTGC
  TGGGAATTGA ACTCAGGACC TCTGGAAGAG CAGTCAGTGC TCTAAACCAC TGAGCCATCT
  CTCCAGGTCC CCTTCCCCCC ATGAATTCTT CCTAGATGAT TTTGAGTATT CACAGGGACT
  CCTTAATCCA TACCTAAAGA ACTAGGATCT AACACCAAGC ATGGCTCAAA GTGGCTTTGA
  K
  GCCAATTTGT AGTTTCCTGC TGGGGTCCTT GGGATCTGGT GTGACTCCTG CTTTTGACCC
  CAAGTTTTCA GCCATATGGA TCCACATTCC TGTCATCTTT CAGAGCCTTG CAAGGATCAC
  AATAACTTGA CAGGGGCTAC ATGGTGCTTC CAAAAACCAG GACCATATCC TGGAGTCCAT
  GACCGTGCCT TTCTAAAAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46786635	NES10987845	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G		G	T		G
ss321444930	CHEV_4_155425542	CHEVERUD	SCREENING_POP	f	SNP						T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs33215657					SNP	G	G	G	G	G	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46786635	NES10987845	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156135890 () rs orientation: forward

Symbol	Name	Function Class
Gm13648	predicted gene 13648	1282 bp downstream
Rr93557	regulatory region 93557	489 bp distal
Rr97568	regulatory region 97568	324 bp proximal
Rr106662	regulatory region 106662	1170 bp distal
Tssr45000	transcription start site region 45000	960 bp upstream
Tssr45001	transcription start site region 45001	927 bp upstream
Tssr45002	transcription start site region 45002	672 bp upstream
Tssr45003	transcription start site region 45003	661 bp upstream
Tssr45004	transcription start site region 45004	637 bp upstream
Ttll10	tubulin tyrosine ligase-like family, member 10	616 bp upstream