rs33216099 SNP Detail

Summary

• ID
  rs33216099
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156136497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTGGAAA TTCTGGAAGA
  CAACTGTTGT CTTTGGCTAC CCTGTAAATC TCCTCACCTT CAGGTTCTTT TGTGGTTCTG
  CTCATGTTAA GGGGCTCTAG CATCCCCTTA GAGGCTGGGC ATGACAAGTC ACTCACGTGG
  CCTTCCCTAG TCTAAGCTGC CAGTGTGGGA GCTTGTGCTT GGCAGGTCTG AAGGAGCACC
  R
  TTTCTCAGCT GTGCCCAGAG TCCTATGGCG ATAGGAGTGC CCCATAGGTT GTCATTCTCT
  ACTTGTGAGA TCTGCCCTTC TTATGCTGTG CTGGGAGTCG GGGTCTCTGT GGTCAGTCCA
  GTGCTGGATC AAGAGACCTC TCTGCTCTAG ACTAATAGTA CAGTGGGACT GCAGGTGGGC
  TGGGGCACAT AGCACTTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46786647	NES10987849	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A	A	A	G		A
ss321444935	CHEV_4_155426149	CHEVERUD	SCREENING_POP	f	SNP							G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33216099					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46786647	NES10987849	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156136497 () rs orientation: forward

Symbol	Name	Function Class
Gm13648	predicted gene 13648	675 bp downstream
Mir429	microRNA 429	1865 bp downstream
Mirc4	microRNA cluster 4, including Mir429 through Mir200b	1865 bp proximal
Rr93557	regulatory region 93557	1096 bp distal
Rr97568	regulatory region 97568	within coordinates
Rr106662	regulatory region 106662	1777 bp distal
Tssr45000	transcription start site region 45000	1567 bp upstream
Tssr45001	transcription start site region 45001	1534 bp upstream
Tssr45002	transcription start site region 45002	1279 bp upstream
Tssr45003	transcription start site region 45003	1268 bp upstream
Tssr45004	transcription start site region 45004	1244 bp upstream
Tssr45005	transcription start site region 45005	1873 bp downstream
Ttll10	tubulin tyrosine ligase-like family, member 10	1223 bp upstream