rs33216102 SNP Detail

Summary

• ID
  rs33216102
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156136522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTCTTTG GCTACCCTGT
  AAATCTCCTC ACCTTCAGGT TCTTTTGTGG TTCTGCTCAT GTTAAGGGGC TCTAGCATCC
  CCTTAGAGGC TGGGCATGAC AAGTCACTCA CGTGGCCTTC CCTAGTCTAA GCTGCCAGTG
  TGGGAGCTTG TGCTTGGCAG GTCTGAAGGA GCACCATTTC TCAGCTGTGC CCAGAGTCCT
  R
  TGGCGATAGG AGTGCCCCAT AGGTTGTCAT TCTCTACTTG TGAGATCTGC CCTTCTTATG
  CTGTGCTGGG AGTCGGGGTC TCTGTGGTCA GTCCAGTGCT GGATCAAGAG ACCTCTCTGC
  TCTAGACTAA TAGTACAGTG GGACTGCAGG TGGGCTGGGG CACATAGCAC TTCTACTAAA
  CCCTGGGCTG AGTTATTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46786650	NES10987850	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A	A	G		A
ss321444936	CHEV_4_155426174	CHEVERUD	SCREENING_POP	f	SNP							G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33216102					SNP	A	A	A	A	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46786650	NES10987850	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156136522 () rs orientation: forward

Symbol	Name	Function Class
Gm13648	predicted gene 13648	650 bp downstream
Mir429	microRNA 429	1840 bp downstream
Mirc4	microRNA cluster 4, including Mir429 through Mir200b	1840 bp proximal
Rr93557	regulatory region 93557	1121 bp distal
Rr97568	regulatory region 97568	within coordinates
Rr106662	regulatory region 106662	1802 bp distal
Tssr45000	transcription start site region 45000	1592 bp upstream
Tssr45001	transcription start site region 45001	1559 bp upstream
Tssr45002	transcription start site region 45002	1304 bp upstream
Tssr45003	transcription start site region 45003	1293 bp upstream
Tssr45004	transcription start site region 45004	1269 bp upstream
Tssr45005	transcription start site region 45005	1848 bp downstream
Ttll10	tubulin tyrosine ligase-like family, member 10	1248 bp upstream