rs33216406 SNP Detail

Summary

• ID
  rs33216406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84132217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTTTTT GTTCAGGTAT
  GTATGTACAA TGTATGTATG TATGTATGTA TGTATGTATG TATGTATGTA TGTATGATGT
  ATTTATGTAT ATATGTGGGC TTACATGTGC CATGGAACAC ATATGGAAGT CAGGAACAAC
  TCCTACCAGT TCCTTCCTTC CACCACGAAG GTCCTGAGGT TAGAACCTAG ATTGTTAGGT
  Y
  GGGTACAAAC ACCCTGCCTG AAGAGTATTT GGACCCAGAA CCAATAGACA TGGAAAGGGT
  TGGCTTTTTA GATTGGCTCC CTTGTCAAGC AATCACATTT CCTATGTCAT TATTTTTTAA
  AGATTTATTT ATCACACACA CACACACACA CACACGCACA CACACACTCA CACATACACT
  GTAACTTTCT TCAGACACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss39508753	mCV22837376	ABI	CRAMUS_MOUSE	f	SNP	C					C	T
ss60283480	NES15790220	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C		T	C	T	C
ss146121746	ENSMUSSNP6738067	ENSEMBL	ENSEMBL_Sanger	f	SNP	C						T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs33216406					SNP	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60283480	NES15790220	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84132217 () rs orientation: forward

Symbol	Name	Function Class
Gm41637	predicted gene, 41637	737 bp downstream
Rr531870	regulatory region 531870	659 bp distal