rs33217659 SNP Detail

Summary

• ID
  rs33217659
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48988188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGGGTCCC TCCCAGTCAA GGAACCTAAA ACATATGATG
  GTTCTTGTTG CATGGTTGCA GCTCTACACT GCTACCTGCG TAGCTCAGAA GACACGCCCA
  R
  CTTTCCTAAG GTGGGACCCT GCCCTGGATT CTCTCCATCC CACCTGGCCA TACAACTCAT
  CCCACCAGAA TCCTTGTCAA CCACCTTCCT TGTGCCCAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39508837	mCV25099938	ABI	CRAMUS_MOUSE	f	SNP	G	G	A			G		A
ss62763812	NES17344167	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G		A		G	A		A	G	A	A		A
ss145722036	ENSMUSSNP4478382	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					A
ss325410072	CHEV_17_48820485	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33217659					SNP	G	G	A	A	G	G	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62763812	NES17344167	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48988188 () rs orientation: forward

Symbol	Name	Function Class
Tssr148548	transcription start site region 148548	1809 bp downstream