rs33217667 SNP Detail

Summary

• ID
  rs33217667
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24827192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGAGGAAG CATTGGGGTT CCTGGGAGGC ACGTGTGAAT
  GGAGAGATGA CATGCATCCA AGGGTCTGTG GATAGGGCAG ATGCAGAGGA AATCAAATCC
  R
  GAAACCAAAT CAAATCGCAT GAACTTGGTT TCAGATTAAC TTGTTCTTAG ACCAGAGGGG
  CTTTGCGAAG CAGGACCTAG GGACTCCGAG GGAGATGCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45752199	mCV23725042	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33217667					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24827192 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15616	CpG island 15616	1721 bp proximal
Gm71653	predicted gene, 71653	within coordinates
Rr608374	regulatory region 608374	1728 bp distal
Rr608375	regulatory region 608375	699 bp proximal
Smarcd3	SWI/SNF related BAF chromatin remodeling complex subunit D3	within coordinates
Tssr50355	transcription start site region 50355	452 bp downstream
Tssr50356	transcription start site region 50356	465 bp downstream
Tssr50357	transcription start site region 50357	1278 bp downstream