rs33218534 SNP Detail

Summary

• ID
  rs33218534
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148492531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCACCGTATG TAGGTGCTGG GAACTAAGTC TAGGCTCTTG GCAAGAGCAG CCAGTGTTCT
  AACCACTGAG ACATTTCTCT AGTCCTAGAA GGGCTTTTTG GCAGTGGTGT TTTGTTATGT
  TTTGTTTTTT GTTTTGTTTT TTTGTTTTCT TGTTTGTTTT TGTTTGTGAG ACCGTGTTTC
  TCTGTGTAAC CCTGAATGTC CTGGAACTCA CTTTGTAGAC CAGGCTGGCC AGAATCTCAG
  AGACCTGCCT GTCTCTGCCT CCTGAGTGCT GGGATTAAAG GTGTGCGCCA CCACCACCTG
  K
  CGGGTTATTT TTTAATAGCA GCAAAATACA TATAAATTAA ATTTACCATC GTAACCTTTT
  TTAGTTGTTC AGTTCTGTGA CATAAGTCCG TGCACTCAGA AGAGCCCTCC TTCCCTCTGC
  TCTCTCATTC TTCAGCTTTG TATTCATTAA ACAACTCCCC TCCCCAACTC TCCTCCCCTA
  CTCCTCACTT TCTGTTTAGA CAGTTGTTTT CAATTCTATT CAGTACCTCA GGTGAAGGGA
  AAGAACACTT GTCTCTTTTC TTTGGCTTTT TTGAGACAGG GTTTCTCTGT ATAACCCTGG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45752006	mCV22903079	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33218534					SNP	G	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148492531 () rs orientation: forward

Symbol	Name	Function Class
1700013A02Rik	RIKEN cDNA 1700013A02 gene	1860 bp upstream
Gm72666	predicted gene, 72666	within coordinates
Gm72684	predicted gene, 72684	1796 bp upstream
Rr378792	regulatory region 378792	123 bp downstream
Rr378793	regulatory region 378793	667 bp upstream
Rr625197	regulatory region 625197	1870 bp distal
Rr625198	regulatory region 625198	1566 bp distal
Rr625199	regulatory region 625199	323 bp distal
Rr625200	regulatory region 625200	813 bp proximal
Tssr54578	transcription start site region 54578	1840 bp upstream
Tssr54579	transcription start site region 54579	1696 bp upstream