rs33218548 SNP Detail

Summary

• ID
  rs33218548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123648292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGT CCATATGGTA ACTTGAGAAT
  R
  TTCATTGTGT CTCAGCTGTA TGATA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45751451	mCV24599748	ABI	CRAMUS_MOUSE	f	SNP		A	A				G
ss60834168	NES16018851	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	G		G	A		G	G	A	G		A
ss149195316	ENSMUSSNP2931547	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A				G
ss321670959	CHEV_5_123960238	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33218548					SNP	A	A	A	A	G	G	G	G	A	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60834168	NES16018851	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123648292 () rs orientation: forward

Symbol	Name	Function Class
B3gnt4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	231 bp upstream
Cpgi16587	CpG island 16587	1217 bp distal
Diablo	diablo, IAP-binding mitochondrial protein	within coordinates
Gm15751	predicted gene 15751	within coordinates
Gm49027	predicted gene, 49027	1853 bp downstream
Rr620213	regulatory region 620213	1824 bp distal
Rr620215	regulatory region 620215	840 bp distal
Rr620216	regulatory region 620216	1959 bp proximal
Tssr48799	transcription start site region 48799	1738 bp downstream