rs33218688 SNP Detail

Summary

• ID
  rs33218688
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46037495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGAGGCA GAGGCCACAA
  CTGTGAGGAG CCCGGAGCTG GTGGGGGAGG CTGGGGCAGT GGCCTTCTCT GAAGGATCGT
  GGCTGGGGGC ATTTCCTGTT TCAGGCAGGT GCTGGTGTTT GAGAAGCCAG GGCCACGTGC
  AGGGTGAGGC CCAGAACAAG GGCCACACCT ACTGGAGGCC CTTTCCAGCC CAGAGCCTCA
  Y
  GCTGCAGTGA CAGGGCACTT CTGTTCCTGG CTTCCAAGGG CCCTTTTGAA AAGCAGCAGG
  TGCTTTCACC ATAGCAGTTC TGAGGTTGAC CTGGTCTCCC CTTCCCTAGC CCCCAGCCCT
  AGAGTATTGG GAAGTGTACC TGAGACACCT TACTACTCCA CAGCTATTTC AGAGTTTTCT
  CTGCAGTGAG GACCCCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39508848	mCV24294356	ABI	CRAMUS_MOUSE	f	SNP		C	T						T
ss60259588	NES15753063	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	C	T	T	T	T	T	T	T	C
ss145695462	ENSMUSSNP1210672	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33218688					SNP	C	C	T	T	T	C	T	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259588	NES15753063	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46037495 () rs orientation: forward

Symbol	Name	Function Class
Gm35456	predicted gene, 35456	within coordinates
Rr331486	regulatory region 331486	1695 bp distal
Rr331487	regulatory region 331487	306 bp proximal
Rr339880	regulatory region 339880	1894 bp distal
Rr339881	regulatory region 339881	94 bp distal