rs33218907 SNP Detail

Summary

• ID
  rs33218907
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71061849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTT GAACAGGTGG TCCTCCTGCC
  W
  CCACCTCTGG GTGCACGCTG GGAAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss46249023	mCV22785568	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	A
ss145127916	ENSMUSSNP4727580	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		A		T
ss322700617	CHEV_8_73133098	CHEVERUD	SCREENING_POP	f	SNP					T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs33218907					SNP	A	T	T	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71061849 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20475	CpG island 20475	432 bp distal
Cpgi20476	CpG island 20476	within coordinates
Cpgi20477	CpG island 20477	1713 bp proximal
Gm45546	predicted gene 45546	1226 bp upstream
Gm63790	predicted gene, 63790	1194 bp upstream
Rr400904	regulatory region 400904	1645 bp upstream
Rr664832	regulatory region 664832	896 bp distal
Rr664833	regulatory region 664833	395 bp distal
Rr664834	regulatory region 664834	747 bp distal
Rr664835	regulatory region 664835	within coordinates
Rr664836	regulatory region 664836	704 bp proximal
Rr664837	regulatory region 664837	1205 bp proximal
Rr664838	regulatory region 664838	1730 bp proximal
Ssbp4	single stranded DNA binding protein 4	765 bp upstream
Tssr77777	transcription start site region 77777	1191 bp upstream
Tssr77778	transcription start site region 77778	1500 bp upstream
Tssr81636	transcription start site region 81636	869 bp upstream