rs33219172 SNP Detail

Summary

• ID
  rs33219172
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:73142792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAA AACTTGGGCC GGGCGTGGTG
  K
  CACACGCCTT TAAGCCCAGC ACTTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39508961	mCV23494655	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
ss145925118	ENSMUSSNP380700	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T
ss325448124	CHEV_17_73185137	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33219172					SNP	G	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:73142792 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9486	CpG island 9486	320 bp proximal
Rr335920	regulatory region 335920	792 bp distal
Rr340175	regulatory region 340175	8 bp proximal
Rr405431	regulatory region 405431	458 bp upstream
Tssr5197	transcription start site region 5197	347 bp downstream
Tssr145775	transcription start site region 145775	859 bp upstream
Tssr145776	transcription start site region 145776	881 bp upstream
Tssr145777	transcription start site region 145777	927 bp upstream
Tssr145778	transcription start site region 145778	1756 bp upstream
Tssr145779	transcription start site region 145779	1827 bp upstream
Tssr149306	transcription start site region 149306	1672 bp downstream
Ypel5	yippee like 5	831 bp upstream