rs33219213 SNP Detail

Summary

• ID
  rs33219213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153444785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGGGATG GGGACATTAG
  ATTATATATG TAACTGTCAC AATTAAATCC ATCATTGCAC AAAATTAATA TGTTAATTTT
  TAAACCTTTT TTATATTAAC CTTTTAATGG GGGTATCAGG CACATGTTTG TACTGTAATT
  TCAGATATTT AGGAAGCTGA GGCAGACAGA TTCCAAGTTC AAGGTCAATC AGGTAGCTTA
  Y
  TTAGTAAGGC CCTGTCTCAA AAAATAAAAT GAAGTCGGGC ATGGTGGCGC ACGCCTTTGA
  TCCCAGCACT TGGGAGGCAG AGGCAGTCAG ACCACTGTGT GTTGGAGGAG CCTGGTCTAC
  ATAGTGAGCT CCAGGCCAGC CAAGACCACA TAGTAAGACC CTGTCTCAAA GAAGAAGAAT
  AAAAGCATTG TGATGTGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45251832	mCV23861922	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss147998159	ENSMUSSNP3660974	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs33219213					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153444785 () rs orientation: forward

Symbol	Name	Function Class
Gm75178	predicted gene, 75178	within coordinates
Rr567697	regulatory region 567697	1673 bp distal
Rr567698	regulatory region 567698	1319 bp distal
Rr567699	regulatory region 567699	871 bp proximal
Rr567700	regulatory region 567700	1032 bp proximal
Tssr20902	transcription start site region 20902	1682 bp downstream