rs33220229 SNP Detail

Summary

• ID
  rs33220229
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:4331096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGGGTCTTCA GCCCTCAGCC ATACTCTCTT GACTTTACCA TGAAGTGAGC CTTCCAATGT
  TATTATGTGA GTCAGAAACA GGAGTAACCA ATCTTCGAAA TTAATGACCA ATTCAGAGAC
  AGATTTCTTC TTAGCCTTTA GCTAATTTGG GTGAAAATTT AAGAAACACA CCTTGCCCTG
  TGTGTTTTGA CCTTTCCTGT TTAACAGATT AAGTTGAGAA ATATTTAGTT CTGGTACAAA
  CTCATAGACT ATTATAAACT TGGGCACCAA GAACACCTTT ATGGAAATTA GGTAGATTCC
  Y
  TTCATTTGTT CATCAACTCA TTCCATAAAT GTGTACTGAA TGCCTACAGT TTGTGTCAGG
  GAAGAAGGGC TTTGGCCATC ATGGTGATTA TTATTATTAT TATTATTATT ATTATTATTA
  GTCAGACCAC AATTAAATAA ATAGTAATGT AATTTTAATA TAAAAGTATG CTGAATATAA
  TGAAAACTCT AAAGGGCTTG ACACTATAAC AGCAAGCTGC AAGAGAGTCT ATGCAAAGGC
  TGGGAAGGTG GTAGGTAACA GGGGAATGGG TATTCCTCTC TTAGACTAAG CAGGAAGGAG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39509067	mCV23062061	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33220229					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:4331096 () rs orientation: forward

Symbol	Name	Function Class
Tssr146295	transcription start site region 146295	782 bp downstream