rs33221036 SNP Detail

Summary

• ID
  rs33221036
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85918727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGA GAAAAGGGGG ACAAAACAGG
  R
  CTTTCCCCTA TCTGGAAGCT TCCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39509075	mCV23053485	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss146152503	ENSMUSSNP3496610	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
ss325486744	CHEV_17_86010639	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33221036					SNP	A	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85918727 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9587	CpG island 9587	1357 bp proximal
Gm55781	predicted gene, 55781	377 bp upstream
Rr340289	regulatory region 340289	1726 bp distal
Rr340290	regulatory region 340290	326 bp distal
Rr340291	regulatory region 340291	273 bp proximal
Six3os1	SIX homeobox 3, opposite strand 1	within coordinates
Tssr146084	transcription start site region 146084	1927 bp upstream
Tssr149705	transcription start site region 149705	1032 bp downstream
Tssr149706	transcription start site region 149706	1755 bp downstream