rs33221790 SNP Detail

Summary

• ID
  rs33221790
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:63190568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TTTTTTTTTT
  TTACTTGGGA GTAGGGTCTT TCGATTGAAA AGAAACTGGC TCCCACTCCA AAAGGGGAGC
  CGAAAATTGC TTCGGGGACC GCTCAGGTGA CGTGAAGTCT GCGCTGACTG GCTAGGGCAG
  CCCTAAGTAA ATCGGAGTTC GTGTAAACCT CCGCTCGGTT CTTCACGCCG CACACGCCGC
  R
  CAGGGTCATC TGGAAATCTG AGCATCTCTC TTGTGCCTTT CAACCCTCTC TTTCTACCCG
  AGATTTAAAG GCTTGGGGGC AGGAAATGGG ACTTTTCTTT AAAGTGATTC TCTGAAAGCA
  GGTTTTGAAA AGTCGGAGAA AAAAAAAATC TCAGTTTAAA GTGATTACAA TTCAGGGTGA
  ACCTTCAGCT GGAAGGAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39508692	mCV22537330	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss145830436	ENSMUSSNP906981	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33221790					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:63190568 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9409	CpG island 9409	within coordinates
Gm64917	predicted gene, 64917	938 bp upstream
Rr332383	regulatory region 332383	833 bp proximal
Rr340084	regulatory region 340084	within coordinates
Tssr145535	transcription start site region 145535	174 bp downstream
Tssr149006	transcription start site region 149006	1844 bp upstream
Tssr149007	transcription start site region 149007	1400 bp upstream
Tssr149008	transcription start site region 149008	1113 bp upstream
Tssr149009	transcription start site region 149009	881 bp upstream
Tssr149010	transcription start site region 149010	850 bp upstream
Tssr149011	transcription start site region 149011	678 bp upstream
Tssr149012	transcription start site region 149012	537 bp upstream