rs33222267 SNP Detail

Summary

• ID
  rs33222267
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123648643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTTAGCTGA AGGGTTGCAA GGAACTCACT TTGCTCCCGA
  AACAGGGACT GTGTGAGCCT AGCTCGGGTG CTCTCTCCCC ACAGGGCTTC GACTATGTTG
  Y
  CCAGGTTGGG CTGTGTGCTG TTCTGCAGTC TTGTGGTACT ACTGCTCAGC TGCCTGCTCC
  TTCTGAAGGA GCGCATACCA GCAGGCAGCT CCAAGGCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss45751784	mCV24599478	ABI	CRAMUS_MOUSE	f	SNP		T	T			C		T
ss60834167	NES16018832	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C		C		C	T		T	C
ss149195328	ENSMUSSNP4302162	ENSEMBL	ENSEMBL_Sanger	f	SNP			T					T
ss321670962	CHEV_5_123960589	CHEVERUD	SCREENING_POP	f	SNP											T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs33222267					SNP	T	T	T	T	C	C	C	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60834167	NES16018832	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123648643 () rs orientation: forward

Symbol	Name	Function Class
B3gnt4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	within coordinates
Cpgi16587	CpG island 16587	1568 bp distal
Diablo	diablo, IAP-binding mitochondrial protein	within coordinates
Gm15751	predicted gene 15751	within coordinates
Gm49027	predicted gene, 49027	1502 bp downstream
Rr620215	regulatory region 620215	1191 bp distal
Rr620216	regulatory region 620216	1608 bp proximal