rs33222464 SNP Detail

Summary

• ID
  rs33222464
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156133529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGA AGGGTAAGAC AAGGCCTTTG
  R
  ATAGGAGCAG GTCAGCCTTA AGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	LG/J	MSM/Ms	NZW/LacJ	SM/J
ss46786617	NES10987955	PERLEGEN	MM_PANEL2	f	SNP		A	G				G
ss148124983	ENSMUSSNP4237284	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A		G
ss321444909	CHEV_4_155423181	CHEVERUD	SCREENING_POP	f	SNP					G			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	LG/J	MSM/Ms	NZW/LacJ	SM/J
rs33222464					SNP	A	A	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46786617	NES10987955	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156133529 () rs orientation: forward

Symbol	Name	Function Class
Rr93557	regulatory region 93557	1272 bp proximal
Rr106662	regulatory region 106662	660 bp proximal
Tssr44999	transcription start site region 44999	1100 bp upstream
Tssr45000	transcription start site region 45000	1393 bp downstream
Tssr45001	transcription start site region 45001	1426 bp downstream
Tssr45002	transcription start site region 45002	1661 bp downstream
Tssr45003	transcription start site region 45003	1690 bp downstream
Tssr45004	transcription start site region 45004	1713 bp downstream
Ttll10	tubulin tyrosine ligase-like family, member 10	within coordinates