rs33222467 SNP Detail

Summary

• ID
  rs33222467
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156133564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCCCTAT TTGCCGTCTT
  TGGAACATTT TAGGGCATTT TAAATTAATT CCTAGACAAA AGTTTGTGCC TCCCATCACA
  TCAAGTGAAT AAACCCAGTG TGTTGGGTGA ATGATGAGAC GGTACAGAGA ACTCTGTGAC
  TGGGAAGGGT AAGACAAGGC CTTTGGATAG GAGCAGGTCA GCCTTAAGGA GGAAGACAGG
  Y
  CTGTGGATTG ACTGACTGAC AGCAAAGAAA GGCCAAATAT GGGCATCATG TCTATCAATT
  CTACCCCTAC TGAATCAACA GGAGAAGAAA AAAAAAATCC AAAAAGTTCT GTAGGGTGGA
  GAGAAATCCT GGAATGAGAA ACTCATGCCA CTCTAGAGGA CAGGCTGCAA AGATGGAAGA
  ATCCAGGAGT GCCTGGAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46786620	NES10987956	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T			T	T	C		T
ss148124987	ENSMUSSNP3282624	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss321444910	CHEV_4_155423216	CHEVERUD	SCREENING_POP	f	SNP								C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33222467					SNP	T	T	T	T	T	T	T	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46786620	NES10987956	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156133564 () rs orientation: forward

Symbol	Name	Function Class
Rr93557	regulatory region 93557	1237 bp proximal
Rr106662	regulatory region 106662	625 bp proximal
Tssr44999	transcription start site region 44999	1135 bp upstream
Tssr45000	transcription start site region 45000	1358 bp downstream
Tssr45001	transcription start site region 45001	1391 bp downstream
Tssr45002	transcription start site region 45002	1626 bp downstream
Tssr45003	transcription start site region 45003	1655 bp downstream
Tssr45004	transcription start site region 45004	1678 bp downstream
Ttll10	tubulin tyrosine ligase-like family, member 10	within coordinates