rs33223005 SNP Detail

Summary

• ID
  rs33223005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143929852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGAGCCTT TCCCTGTGAG
  GGGAAGCGTC ACACCCCTTA AACAGTGGCA AACTGGCTGC CCCAGGAACA CCTAAGAAGG
  TCGAGTATTT ATTTAATGCA CACGACACAG CACTTGGAGT CCTGGGCTGT TTGATTGCCC
  TCAGACACAC CTCACTTAAC CCTGAGTCCT TAGAGCGCAG GCACCATCCC ACCCACCCAC
  Y
  GCAGCAAGTG CGCTCAGGGA GGGGGTGGTC CTGCTGATCA CTAGTGAGAA GTAATTGAAT
  GCTGACAGGG AGCAGTGGGT AAAACAGCCT GGCCGTGGCT AGTGACAACA TACTGTCCAT
  TAAGGACAGG ACCCGGCAAG CTGCAGGGAG CTGAGCCAGT CAGGCTGAAG CAGACCCACT
  CCGGCACCTA CCGTCAATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45751971	mCV25192405	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss144605847	ENSMUSSNP6552287	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss321708912	CHEV_5_144753903	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33223005					SNP	T	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143929852 () rs orientation: forward

Symbol	Name	Function Class
Ccz1	CCZ1 vacuolar protein trafficking and biogenesis associated	within coordinates
Tssr54387	transcription start site region 54387	418 bp upstream
Tssr54388	transcription start site region 54388	386 bp upstream
Tssr54389	transcription start site region 54389	312 bp upstream