rs33223086 SNP Detail

Summary

• ID
  rs33223086
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33856988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCTAGTAG GAGCTAGGAA ACTTGTGCTT TATAGATGTG
  CTTAGGTCTA ATGACCTGAC TTTGGGGACA GTAGTGGACA GGCAGGAACT CAAGGAGGGG
  R
  CAGAAAGGCT ATCTCCGCCT CCTTCCTCCT CTGCCCTCCC CAGCCCAACA GCTCCGACTT
  GGTGTGTCAG CCCGTGGAGC AGAAACCACA CTTAACTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39509580	mCV24098553	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	G
ss145493338	ENSMUSSNP7224630	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
ss325366940	CHEV_17_33774959	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33223086					SNP	A	A	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33856988 () rs orientation: forward

Symbol	Name	Function Class
Gm20507	predicted gene 20507	within coordinates
Pram1	PML-RAR alpha-regulated adaptor molecule 1	42 bp upstream
Rr392542	regulatory region 392542	1479 bp upstream
Tssr143785	transcription start site region 143785	202 bp downstream
Tssr143786	transcription start site region 143786	184 bp downstream
Tssr143787	transcription start site region 143787	75 bp upstream
Tssr143788	transcription start site region 143788	106 bp upstream
Tssr143789	transcription start site region 143789	116 bp upstream
Tssr147440	transcription start site region 147440	1897 bp downstream