rs33223693 SNP Detail

Summary

• ID
  rs33223693
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:12327729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAACCCTG AAACATCAGT
  TTTTGTTGCT GATGGCTAAG CATCTGCTCA GATAGACCAG TCCTTGGTGA ATGGCTAGAC
  AAACCATCCC TCTGTCCTTG GAGTCAGCCT GTCCACTGGT TTTACTAAGA ACCAGGGACC
  AGTGTTTTCC TTAGCCCTGT AGTCTCAGTC TGTGCCCACA CTCAGGAGGC TAGCATGCCA
  R
  ACTGACTGAC TGATTTTAGG CTTAACGTTT CCAACTCAAG TTCTTCTGTT CATTTCTTCC
  ATCAAGAAGC TTTTACTTCT CTTGGAAGGA AGGATGAGAG GATGGGCCAG AGAGCTTTAT
  AGTTAGAGAG ACTGGACATC CTGTCCTCAT CTTAAATGAC AGGAAGTTGG GTGAGGTGAA
  CTTGCCATGC AGTCAGCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46249280	mCV24317887	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss60572195	NES16031338	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		A	A	A	A	A	A	A	A
ss148676535	ENSMUSSNP7011228	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33223693					SNP	G	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60572195	NES16031338	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:12327729 () rs orientation: forward

Symbol	Name	Function Class
A230072I06Rik	RIKEN cDNA A230072I06 gene	1096 bp upstream
Rr659697	regulatory region 659697	830 bp proximal