rs33224091 SNP Detail

Summary

• ID
  rs33224091
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91066273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGAAACCAG AAGAATGCAG TAAGGTTTAG AAAAGTTCCA
  AATTGATTAG GTGGCTTCAA GGAAGAGAGG TAAATCAGAG TATAATAAAA ATAAGCCGGG
  M
  ATGGTGGCAC ACGCCTTTAT TCCCAGCACT TGGGAGACAG AGGCAGGCGG ATTTCTGAGT
  TCTGAGGACA GCCAGGGCTA CACAGAAAAA CCCTGTCTC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45252308	mCV24870075	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss146923698	ENSMUSSNP527276	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320392004	CHEV_2_91076085	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33224091					SNP	C	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91066273 () rs orientation: forward

Symbol	Name	Function Class
A330069E16Rik	RIKEN cDNA A330069E16 gene	1218 bp upstream
Cpgi11902	CpG island 11902	632 bp proximal
Ddb2	damage specific DNA binding protein 2	within coordinates
Rr397126	regulatory region 397126	1044 bp upstream
Rr560675	regulatory region 560675	308 bp distal
Rr560676	regulatory region 560676	947 bp proximal
Rr560677	regulatory region 560677	1218 bp proximal
Rr560678	regulatory region 560678	1349 bp proximal
Rr560679	regulatory region 560679	1666 bp proximal
Tssr18884	transcription start site region 18884	1182 bp upstream
Tssr18885	transcription start site region 18885	1244 bp upstream
Tssr25176	transcription start site region 25176	912 bp downstream
Tssr25177	transcription start site region 25177	941 bp downstream
Tssr25178	transcription start site region 25178	949 bp downstream
Tssr25179	transcription start site region 25179	997 bp downstream
Tssr25180	transcription start site region 25180	1039 bp downstream