rs33225024 SNP Detail

Summary

• ID
  rs33225024
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:74112808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGC CGAGTTGTTC TCATGGTCGC
  R
  GGCCTGGGGA TGGGGGTGAA CTGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39509796	mCV25305829	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss145938511	ENSMUSSNP1274764	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss325449557	CHEV_17_74155153	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33225024					SNP	G	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:74112808 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9490	CpG island 9490	310 bp distal
Ehd3	EH-domain containing 3	within coordinates
Rr530824	regulatory region 530824	962 bp distal
Rr530825	regulatory region 530825	1152 bp distal
Rr530826	regulatory region 530826	460 bp proximal
Rr530827	regulatory region 530827	1525 bp proximal
Tssr145810	transcription start site region 145810	974 bp downstream
Tssr145811	transcription start site region 145811	942 bp downstream
Tssr145812	transcription start site region 145812	912 bp downstream
Tssr145813	transcription start site region 145813	872 bp downstream
Tssr145814	transcription start site region 145814	857 bp downstream