rs33225696 SNP Detail

Summary

• ID
  rs33225696
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180685639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCTGGATT ACTCTTTAAC TTTCTGGTAG TTTGGAACTC
  TCAGGGGAAA ATCTCAGTGC CAACAGTTAT AATCCACAAC TCGGGTGCCT TCAGAGTCTA
  R
  GCTTGGGGCA GATTAGATTC GACACAACCC AAAGGGTAGC CCTGTTTCCT GGTTTGTGCC
  TTAGCACCTA TGTGCCCAAG GCTCAGGAAC ATTGGCCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45252519	mCV27571623	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	G
ss148396234	ENSMUSSNP6562626	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33225696					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180685639 () rs orientation: forward

Symbol	Name	Function Class
Chrna4	cholinergic receptor, nicotinic, alpha polypeptide 4	300 bp upstream
Gm74971	predicted gene, 74971	within coordinates
Rr572911	regulatory region 572911	880 bp distal
Rr572912	regulatory region 572912	within coordinates
Tssr28158	transcription start site region 28158	292 bp upstream
Tssr28159	transcription start site region 28159	242 bp upstream