rs33226980 SNP Detail

Summary

• ID
  rs33226980
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85439300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGCAAGGGTT CCAGCAGCAG CAGAGCAAGC GCACTGGCAG GGGAGAGGGA GGGAGAAATA
  GAGCCCCCAC TCACTCACGG TGCCAGCCCA GTGCTGGGAG GGGAGGCCCC TGCTGTCCCT
  TCCTCTGGCA CCCCCTCCCA CCTTCTGCCA GCAGGGCTTT CTCGGCCTCC CTGGCACAGA
  GCAGAGTGGG CTGGCTCCAG ACCCTGCTCA GAGCCATTGT TTTTCTTCTC AACACCCCCA
  AGTTCAAGTT CATCTGGGTG TTACATCATG TCTGGTTGCT CCTGGAAACC AGACGGGTCA
  S
  ACGTGACTCT GGGGAAAGGG GGTGGGAGGC TGGAGGGGGG TTGAAGTTCC CTTCTCCTCC
  CTCCTCACCA CTAGGGAGCT CTGAAGTTTG ACTAAGTTGT GTGTGTGTGT GTGTGTGTGT
  GTGTATGTGA GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGATTTAAA
  GGAAAAGAAA GAAAAGAAAA GACCCTCCAA GCACACACAA AAAACTTCCA TCCACCAAAC
  TTTCTCTGGA CTGGGGCCTC GGCAGAGGCG GGGCAGGAGG CAGCAGAGGT GGCCCAGAGG
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46249750	mCV24193955	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33226980					SNP	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85439300 () rs orientation: forward

Symbol	Name	Function Class
Nfix	nuclear factor I/X	within coordinates
Rr666590	regulatory region 666590	1188 bp distal
Tssr82128	transcription start site region 82128	1122 bp downstream
Tssr82129	transcription start site region 82129	1141 bp downstream
Tssr82130	transcription start site region 82130	1162 bp downstream
Tssr82131	transcription start site region 82131	1585 bp downstream