rs33227305 SNP Detail

Summary

• ID
  rs33227305
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156193191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTATTCTTA GATCCACTGG GCCTTAGGGT AGAATTCCAG
  AGAGGAGTAA ATCGCGGTGG TGCAAAGAAT GCTGAGTTGT CTGACCAGCT CTACCAGATC
  W
  GAGAAACTGA GGTCATGAGG AAGTGAGGAA GGCCTAGCAG AGAGCAGGGT GAAAAAAACA
  GGACCAAGCC TGACAGATAC TCTCTAATCT TTGTTCAAAA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46787943	NES10985236	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33227305					SNP	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46787943	NES10985236	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156193191 () rs orientation: forward

Symbol	Name	Function Class
9430015G10Rik	RIKEN cDNA 9430015G10 gene	1264 bp upstream
Cpgi15500	CpG island 15500	895 bp proximal
Gm69135	predicted gene, 69135	within coordinates
Rr398931	regulatory region 398931	1006 bp upstream
Tssr40790	transcription start site region 40790	1237 bp upstream
Tssr40791	transcription start site region 40791	1279 bp upstream