rs33227311 SNP Detail

Summary

• ID
  rs33227311
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156193277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGACCA CAGCTTTATT
  CTTAGATCCA CTGGGCCTTA GGGTAGAATT CCAGAGAGGA GTAAATCGCG GTGGTGCAAA
  GAATGCTGAG TTGTCTGACC AGCTCTACCA GATCAGAGAA ACTGAGGTCA TGAGGAAGTG
  AGGAAGGCCT AGCAGAGAGC AGGGTGAAAA AAACAGGACC AAGCCTGACA GATACTCTCT
  M
  ATCTTTGTTC AAAACAGAGC CCTGGTGCAC ACAGTTTTGC TCTTTTCCAG GGGCGGTCTA
  GTGGTTCTAC CTCACTTCAG AGAAGATGTA AGCTTTCAAA AAGTACAGTG CCAGGGCTGG
  TGAGATGGCT CAGTGGGTAA GAGCACTGAC TGCTCTTCTG AAAGTCCTGA GTTCAAATCC
  CAGCAACCAC ATGGTGACTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46787949	NES10985240	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		A	A	A	C		A
ss321445488	CHEV_4_155482929	CHEVERUD	SCREENING_POP	f	SNP										C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33227311					SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46787949	NES10985240	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156193277 () rs orientation: forward

Symbol	Name	Function Class
9430015G10Rik	RIKEN cDNA 9430015G10 gene	1178 bp upstream
Cpgi15500	CpG island 15500	809 bp proximal
Gm69135	predicted gene, 69135	within coordinates
Rr398931	regulatory region 398931	920 bp upstream
Tssr40790	transcription start site region 40790	1151 bp upstream
Tssr40791	transcription start site region 40791	1193 bp upstream