rs33228168 SNP Detail

Summary

• ID
  rs33228168
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156193701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCCCTCTT CTGGGGTGTC
  TGAGGACAGC TACAGTGTAC TTACATATAA TAATAAATAA ATCTTTAAAA AAAAAAAAAG
  TACAGTGCCT CCTCCTTGTG TTACTGTGGG GCGTCCATGG AGTTTTAGCT TCTGTGAAGA
  AGCCTAAGTA CCCGAGGCCT CCAAAGTGAG AGGCCGGGGC GATCAGGCAG CCCAGAGACA
  W
  GACTCCTCCT AAGCATTCCA CTTGGTGACC CCAGAGGCAC CATGCTCGGC TTAAGAGTGG
  GTGTGGCTTC CCATTTGGGA GGAACCAGAG TCCAGCTCCC TAAGCAGACA CGCCAAAGAT
  GTATTAGAAA GTCCCGATTT TTACAAAAGA ATGAATTTGA ACTTTGTCTT CATCTTGAAA
  TGGGGCTAGC CAAATCACGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46787958	NES10985188	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		A	A	A	T		A
ss321445492	CHEV_4_155483353	CHEVERUD	SCREENING_POP	f	SNP										T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33228168					SNP	A	A	A	A	A	A	A	A	A	T	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46787958	NES10985188	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156193701 () rs orientation: forward

Symbol	Name	Function Class
9430015G10Rik	RIKEN cDNA 9430015G10 gene	754 bp upstream
Cpgi15500	CpG island 15500	385 bp proximal
Gm69135	predicted gene, 69135	within coordinates
Rr398931	regulatory region 398931	496 bp upstream
Tssr40790	transcription start site region 40790	727 bp upstream
Tssr40791	transcription start site region 40791	769 bp upstream