rs33230166 SNP Detail

Summary

• ID
  rs33230166
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:102355023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATATATA TATATATATA
  TATATATACC ATATATATCA TATATATACA AACATACACA CATACAAACA TGCATGCACA
  CATAGACACA AACATGTATA CATACATGCA TGCATGTACA CACACACACC ATTTCCACAG
  GCAGGTATAT CAATGGTGGT ATTTCACAGT AGCCCATTAG ATGTGGGTAA ATCACTCTGG
  K
  TGGCTAACTC TGTTTAGTTG AGGTCTGAAT AAGCTTTAAA GACAAGACTC TTAGTTCTGC
  TGAATGGCAT TTGCTGAGAG CTCACTTGTG GCTGCCAGGA AGCTCTGTGG GTGTTGCTCA
  TGTTGAATAC GTGCCAGCCC TGGGTGTGGC AGATCTACAG AAGCACACTG CAGTGTGGTT
  GCTGTGCACT GGGCTTCTAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47773139	NES11263147	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33230166					SNP	T	G	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47773139	NES11263147	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:102355023 () rs orientation: forward

Symbol	Name	Function Class
Gm68206	predicted gene, 68206	within coordinates
Rr192160	regulatory region 192160	1178 bp proximal
Rr202365	regulatory region 202365	40 bp proximal
Rr202366	regulatory region 202366	1233 bp proximal