rs33230170 SNP Detail

Summary

• ID
  rs33230170
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:102356492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCCCATG GAGTTAGGAT
  GTGACCACGT GGAGTCAAGG ACTGACCCTC TCCTAGCTCA GAGGACCAGG AGCATGGAGC
  CCACGAACGC AATGTAGATT TAGCCACCAG AGGGCGATAG AGGGCCCGGG GAGTGTGGGG
  CAAGGACAGT AGGGGAGGGT TAGAAAGTAG AGTGATGAAA TAGCGGGCAA AGGCAGGCAT
  Y
  CTTGGCCACT CTTTGGGAAA CTGGAATAAC AAGGGGAGCC AGTAGATAGG GATGGAAATG
  CAAGAGGAAA TGGTGCTGCC CACGGGGGTA ACAGAATGTC TGTTCCTCTC CCCCCTGATC
  TAAGCCGCTA AGGTGTTGGA TTGCTTAACT GAACCATTTT GGTTGTTGTG GTGATGGTTG
  TTTTTCTGCC TGTCTTTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47773144	NES11263108	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33230170					SNP	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47773144	NES11263108	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:102356492 () rs orientation: forward

Symbol	Name	Function Class
Gm68206	predicted gene, 68206	within coordinates
Rr192160	regulatory region 192160	within coordinates
Rr202365	regulatory region 202365	1265 bp distal
Rr202366	regulatory region 202366	within coordinates