rs33230171 SNP Detail

Summary

• ID
  rs33230171
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:102356685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCATCCT TGGCCACTCT
  TTGGGAAACT GGAATAACAA GGGGAGCCAG TAGATAGGGA TGGAAATGCA AGAGGAAATG
  GTGCTGCCCA CGGGGGTAAC AGAATGTCTG TTCCTCTCCC CCCTGATCTA AGCCGCTAAG
  GTGTTGGATT GCTTAACTGA ACCATTTTGG TTGTTGTGGT GATGGTTGTT TTTCTGCCTG
  W
  CTTTCCACAG AACCGGGTAT AGAGAGGTCC AGGAAGTGGC GGAAGAGACT CCATCTCGTT
  CCACAGGTCC TGTTCTGATG CCCCGCTGGG GACCTCATTC TCAGAAAGCC TCAGCAGTGT
  TCGGTATATT TTTAAAGCCT TGTGTATTTA TCAGCTTAAT TACTGATTTT TATTTCACAG
  TTAAAAATAA TAAAAATGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47773145	NES11263109	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33230171					SNP	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47773145	NES11263109	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:102356685 () rs orientation: forward

Symbol	Name	Function Class
Gm68206	predicted gene, 68206	within coordinates
Rr192160	regulatory region 192160	85 bp distal
Rr202365	regulatory region 202365	1458 bp distal
Rr202366	regulatory region 202366	53 bp distal