rs33230709 SNP Detail

Summary

• ID
  rs33230709
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:132590550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGGCCTG AATTTTCCCT
  TCCAGAAATG AGGAATGGCC TCGTAAGTCA CTCCTGAGAT GGCTGAAACC TCTAGGATAG
  CTAGTTAGTC CTATGTTCCC AGGAGAGGAT GGCTGTGCCT TTCTCTGTAT GTGGAGACAT
  TCATTAGGCA CTATGCATGA GCTGCCTACA GAGCATATGG TTCTTACAAT GTGAGTCAAC
  S
  TATTTAGTTA CCAAACCCTT TGTAACTGAG GGTTATATCT CACTGTGGAA GCCAGGACCT
  CTCAGCACCA TTCATTTTAA GAGTCTCCTG CCAGGCGGTG GTGGCTCATG ACTTTAATCC
  CAGCACTTGG GTGGCAGAGG AAGTCTTATA AGCCCTGGCA CCTTGAAGCC CTATGAATTG
  TTCTAGAGGG CCAAAGAGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47272414	NES11563777	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33230709					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47272414	NES11563777	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:132590550 () rs orientation: forward

Symbol	Name	Function Class
Ctbp2	C-terminal binding protein 2	within coordinates
Rr154153	regulatory region 154153	1051 bp proximal
Rr163833	regulatory region 163833	486 bp distal
Tssr75237	transcription start site region 75237	563 bp upstream
Tssr75238	transcription start site region 75238	929 bp downstream