rs33230999 SNP Detail

Summary

• ID
  rs33230999
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:69147268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGAAAGGCTC TGACCAAGAA AGTCCTCAAA CATTACTTTT GAGTCTCCAC ATCCACAGGA
  TTTACAAGTA TGTCAGGGCT CCCACTGGCT GCCAGCCAGG AAGCTTTCAG ATAGAGGGTC
  TTGGAACATG TGGGGGATGG GATGGGGAGA GAGGAAAGTT TTTCTCAAAC TGGTTCAAAC
  CACCGTTTCT TTCCATCGCA CAAACTGGTC TTTGATTTGT GTACACAGCT TTGGGGTGGG
  GGTGGAGACA CACCTGGAGT TCCATCCAGG GGCAGGGGCA ATCCTGGCAC GTGGGCGGTT
  K
  CCGGCAGCCA AGCCCAGCAC CCTCTGACTG TGTTCCTCTA CTTTGCGCAG GAGGAGGTGA
  CCAAGCAGCT AGTGGGCAGC TGGCGCTCCC CCCACACAAG CTTCAGCCGC AGCAGCCCTA
  CGGGCTAGCC TTGCATTCCA CCAGTTCACC ATGATCGCCA CCGGTGGCCT ACTGAGAATA
  TCTGCGAGAA AGCAGGATCC TCTCCGGCCC CCCAGCCAGG TCCCTAAGCG CAAGAGGAAA
  GCCAAGAAGA GGCGTAAAAA CGACGTGGTG GTGGTGAAAG GCAAACTGAA GCTGTGCTCC
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39510291	mCV24540694	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33230999					SNP	G	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:69147268 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9445	CpG island 9445	522 bp proximal
Rr530161	regulatory region 530161	1543 bp proximal
Tmem200c	transmembrane protein 200C	within coordinates