rs33231627 SNP Detail

Summary

• ID
  rs33231627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:132591117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAGAGTAG GACTATGACA
  TGAAAGAAAG AAAGAATGTC AACAAAAATG GAGCCTGGGT AGAATAAAAG GGCCATGTGA
  TCCAGAAGCG TCAGAGCCTT CACAGAGTAA ACCCAGTCTC ATCGTTCTAA CTTGTTCAAG
  CACCAGAACT TGAACAGTCG TCATGGCAGC ATTAAAGTAC ATCAGTAAAA CATGGTTTGG
  Y
  CCACGTGGTG CTGAGTATTC AGAGAGCCAA AGGATACCTT TAAAAAAGGC AGCTTCTCGT
  TTCCCTAGAA GCCAGCAATG ATGGAGAAGT CGATCATGAT GACCCCCACA AGTGACACTA
  CTGCTTCCTA GACAGAAGAG TCAAACCAGA AAATGCTGAT CTGATTTAAG AGGTTGCAGA
  GTCTGCAGTG GCCTCCCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47272423	NES11563781	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33231627					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47272423	NES11563781	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:132591117 () rs orientation: forward

Symbol	Name	Function Class
Ctbp2	C-terminal binding protein 2	within coordinates
Rr154153	regulatory region 154153	484 bp proximal
Rr163833	regulatory region 163833	1053 bp distal
Tssr75237	transcription start site region 75237	1130 bp upstream
Tssr75238	transcription start site region 75238	362 bp downstream