rs33231929 SNP Detail

Summary

• ID
  rs33231929
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115627750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTACGGAGAC TGAATAATTG TGGTTTAAAA AAAGCATGCT
  ACTTTTTAGA GATTGTTATA GAATCCTAGT TTACTTTTGT TAAGATAATT TCATTTTTCA
  R
  CTTTTCCTAC CGTCTTCCTA TGTGTTAGTT TTCTATTTCC TTGACAAGGT TTCCTTTTTC
  TCCTGCTATA CTGAGAAGTC TGTTATCCCT GGCTGCAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J
ss45753813	mCV23803430	ABI	CRAMUS_MOUSE	f	SNP	A	A				G
ss60828969	NES16028190	PERLEGEN	MM_PANEL2	f	SNP		A	A	G	G		A	G	A		G
ss149125726	ENSMUSSNP948802	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321655044	CHEV_5_115939700	CHEVERUD	SCREENING_POP	f	SNP										A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J
rs33231929					SNP	A	A	A	G	G	G	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60828969	NES16028190	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115627750 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16375	CpG island 16375	130 bp proximal
Gm24265	predicted gene, 24265	92 bp downstream
Gm24407	predicted gene, 24407	563 bp upstream
Gm57305	predicted gene, 57305	within coordinates
Rr1425	regulatory region 1425	within coordinates
Rr108333	regulatory region 108333	1350 bp distal
Rr124163	regulatory region 124163	within coordinates
Tssr48292	transcription start site region 48292	369 bp downstream
Tssr48293	transcription start site region 48293	233 bp downstream
Tssr48294	transcription start site region 48294	157 bp downstream
Tssr48295	transcription start site region 48295	540 bp upstream
Tssr48296	transcription start site region 48296	635 bp upstream
Tssr52808	transcription start site region 52808	759 bp upstream
Tssr52809	transcription start site region 52809	742 bp upstream
Tssr52810	transcription start site region 52810	108 bp upstream
Tssr52811	transcription start site region 52811	139 bp downstream
Tssr52812	transcription start site region 52812	252 bp downstream
Tssr52813	transcription start site region 52813	264 bp downstream
Tssr52814	transcription start site region 52814	300 bp downstream
Tssr52815	transcription start site region 52815	494 bp downstream
Tssr52816	transcription start site region 52816	653 bp downstream