rs33232001 SNP Detail

Summary

• ID
  rs33232001
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:132616742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTGGGCA CCGGCCGGCT
  GGTTCCTGGG TCCCGATAGA AGGGAGGCTC CTTGGGTACC CTGGTGCCCC TGGATGGGTC
  GCCATAGTAG TCTTGTGGCA GCACGGAGCC ACGGCCAGAC ATCACTGCCT GCCTGCTGTC
  GTAGAAGGTG AAGTCAGGCA CGGAGCCCTT TCTTGATGCC AGTGAGTTAT AAAAAGCTTC
  Y
  CGGGACAGGT AGGACTCAGT ATCCTGGGCA CGATGGTTTA GCAGCTCGCA CCAGGTCCCT
  TCTCCAGGGC CATACGTCAG AGAACTTCTC CTCCCTGGAG GTCCAGCATT CTCCCAAGGG
  CCCTCATACC AGCCAGCAGC ATCCCAGCTC TGAGAACGGC CAATATTGAT GTGCCTGCTG
  GGAACCGGCA TTGGCAGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47272987	NES11562680	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33232001					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47272987	NES11562680	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:132616742 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ctbp2	C-terminal binding protein 2			Coding-Synonymous
				Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr656751	regulatory region 656751			225 bp proximal
Tssr75241	transcription start site region 75241			300 bp downstream
Tssr75242	transcription start site region 75242			456 bp downstream
Tssr75243	transcription start site region 75243			488 bp downstream