rs33232430 SNP Detail

Summary

• ID
  rs33232430
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24851390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTTAAATA AGATGGAAAT CAACTGAGGA ACAAATCCAC
  ACACGTGCAC ACACTATCTA TAAAGATAGT GTGAAGATAA AGACTATGTG TGTGTGTATA
  Y
  TGTATCATAT ATATTATATT ATGTTATACA ATTATGTTAA ATAATTATAT AATTTAATAT
  ATACAATGTT ATATATAACA TATTATGCAT ATTATATAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45753360	mCV23207938	ABI	CRAMUS_MOUSE	f	SNP	C	C		T
ss148098531	ENSMUSSNP1083744	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C	T
ss321496138	CHEV_5_24152210	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33232430					SNP	C	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24851390 () rs orientation: forward

Symbol	Name	Function Class
1700022A21Rik	RIKEN cDNA 1700022A21 gene	1292 bp upstream
Tssr45438	transcription start site region 45438	929 bp downstream
Tssr45439	transcription start site region 45439	922 bp downstream
Tssr45440	transcription start site region 45440	909 bp downstream
Tssr45441	transcription start site region 45441	892 bp downstream
Tssr45442	transcription start site region 45442	886 bp downstream