rs33232839 SNP Detail

Summary

• ID
  rs33232839
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:132617164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGAAGCC TTTCTTTATA
  AATCTTCAAT TACATACATC CAAACCAGAC CTGGCCACAC GCGAGCCCTT CCGAGACGGC
  AGGAACAAAC AACTGGGGGT TTCTGTTTCA AGGCACGACC TAAATTATTA ATCCTCTGAA
  ACCTTAGTAG GCAAAAAGCA GACTCACGGT AACTTTGCCT CACTCCCCAA TGGTAGCCCG
  M
  AAGGTCTGTC CTGTGTGCTT CTAAGCCCAG GCAGGAGGCT GTGCTCCAGC CTGCTGGGCC
  CCCTTTCCAG TGGCTGTGCT CACATGGCCC CCTCAGCTCT TGCAGCGTGA GGATTAGGAG
  CTAAATAAAA CCCCTAAAGC TTTTGTTCCA TGTGACATCT CGGACTGATG AAGCTGGCTG
  CTTGCTTTAG CCAGGCCTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47272996	NES11562685	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33232839					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47272996	NES11562685	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:132617164 () rs orientation: forward

Symbol	Name	Function Class
Ctbp2	C-terminal binding protein 2	within coordinates
Rr656751	regulatory region 656751	within coordinates
Tssr75241	transcription start site region 75241	106 bp upstream
Tssr75242	transcription start site region 75242	34 bp downstream
Tssr75243	transcription start site region 75243	66 bp downstream