rs33233326 SNP Detail

Summary

• ID
  rs33233326
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23898015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTGCTGCC AAGCCTGGCA ATCTGAGTTC GATCCCTGGG
  GCCCACAGAG TAGAAGAAGA GAACAAACTC TGATCATAGG TATGCAGTGT GACAGGGTGT
  M
  GTCGTCGTCG TCGTCGTCCC CCCGCCGTCC CTGCCCCCCA AAGAGTCACA AAAAAGAGTC
  ACAAAAGTAA TGTATCCTTA GGTAACATAC AGACCTGTC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss39510596	mCV24340440	ABI	CRAMUS_MOUSE	f	SNP	A	C
ss325326761	CHEV_17_23816008	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs33233326					SNP	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23898015 () rs orientation: forward

Symbol	Name	Function Class
Cldn6	claudin 6	330 bp upstream
Cpgi8683	CpG island 8683	1413 bp distal
Cpgi8684	CpG island 8684	251 bp proximal
Rr523107	regulatory region 523107	1083 bp distal
Rr523108	regulatory region 523108	within coordinates
Rr523109	regulatory region 523109	629 bp proximal
Tnfrsf12a	tumor necrosis factor receptor superfamily, member 12a	1592 bp upstream
Tssr142943	transcription start site region 142943	322 bp upstream
Tssr142944	transcription start site region 142944	631 bp upstream
Tssr142945	transcription start site region 142945	696 bp upstream
Tssr142946	transcription start site region 142946	1997 bp upstream
Tssr146643	transcription start site region 146643	1585 bp upstream
Tssr146644	transcription start site region 146644	1557 bp upstream
Tssr146645	transcription start site region 146645	1389 bp downstream