rs33233546 SNP Detail

Summary

• ID
  rs33233546
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:132619119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGGTCCA GGGAAGGTGA
  GCTGGGGAAG CTGTTTGCAG GGTTCTCTAC TTGGCACTAT TCAGAAGAAC ATCCCAGCAA
  GCAGACAGGT GGGGGAGGGG GGGGTGTGTG CCAGTGTGCA CACACATACA CTGACACAGA
  AAGGGTGCTA ATGTCTGGGC CCAGGGGTTT TTTGAAGCAG AGCACTAAAC CTCATGGAGA
  Y
  GAATGTGTCT CTACTGCATA ACTGGCTAGC GAACACAGCT GACCAAGCAA GATGGATATC
  CCAGGTTATC ACCCACCCTT CACAAGCAAG GGATTCAAAG TAAGACAAGG CACTCACCCA
  GTTGCCAGGC CAACTGGGGG GGGGGGGGGC ATCAATTATA TACCTGGCCA CATGTGAGTA
  TCACAGGTAC TGATGACATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47273038	NES11562474	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33233546					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47273038	NES11562474	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:132619119 () rs orientation: forward

Symbol	Name	Function Class
Ctbp2	C-terminal binding protein 2	within coordinates
Rr656751	regulatory region 656751	1652 bp distal
Tssr75242	transcription start site region 75242	1908 bp upstream
Tssr75243	transcription start site region 75243	1871 bp upstream