rs33233818 SNP Detail

Summary

• ID
  rs33233818
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115048057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTAAACCTTC CCTGGTTTAC CCTCTGAAAA CCTGCTATCC CATCCTCCCT CCTCTGCTGC
  TATGAGGGTG TTCCCTTCAC CCACCCACCC ACTCCTGCCT CCCGGCCCCG GCCCCGGCAT
  TCCCCTATTT TTTTGGTTTT CGTTTTCGTT TTGGTTTTGG TTTTGGTTTA TTTAATTTTT
  TTTTTAATTT TTTGTTTTTT TTTTTTAAGA CAGGGTTTCT TTGCATAGTC CTGGAACTCA
  CTCTGTAGAC CAGGCTGGCC TCAATCCCAA AACCTGTACC TGCCAGCCCC CCCCCCCCCC
  M
  CACACACACA CACTGATATA CTAGGATCCT CCTGTAAGTC CTGTAAGTGC TCGGCTGAGG
  GACGTCTCAT TTAACCTACC AGGAGACCAT TCCAGATCCA AGCCATCTTT TCAGCAAATA
  TGTCAGAATT CTGTGACGTG ACATATTTTA ATGTCTAGAA CCTAACCCTG AAGCAGAATT
  TTTAGGACAC ATCCAGACTT TTGGCATAAC AGTGATCGCC CTTGAACAAC CCTCCTAAAG
  CCAGACACAA CTATTAAATG ACATCACTGT AATCCCCAGG CTCCCATAAG GACAACGCTG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45753924	mCV24698238	ABI	CRAMUS_MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs33233818					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115048057 () rs orientation: forward

Symbol	Name	Function Class
Oasl2	2'-5' oligoadenylate synthetase-like 2	within coordinates
Rr618060	regulatory region 618060	477 bp proximal
Tssr48138	transcription start site region 48138	87 bp downstream
Tssr48139	transcription start site region 48139	1015 bp upstream
Tssr48140	transcription start site region 48140	1049 bp upstream
Tssr48141	transcription start site region 48141	1258 bp upstream
Tssr48142	transcription start site region 48142	1357 bp upstream
Tssr48143	transcription start site region 48143	1386 bp upstream
Tssr48144	transcription start site region 48144	1439 bp upstream
Tssr48145	transcription start site region 48145	1495 bp upstream
Tssr48146	transcription start site region 48146	1544 bp upstream
Tssr48147	transcription start site region 48147	1586 bp upstream
Tssr48148	transcription start site region 48148	1648 bp upstream
Tssr48149	transcription start site region 48149	1675 bp upstream
Tssr48150	transcription start site region 48150	1686 bp upstream
Tssr48151	transcription start site region 48151	1704 bp upstream
Tssr48152	transcription start site region 48152	1786 bp upstream
Tssr48153	transcription start site region 48153	1876 bp upstream
Tssr48154	transcription start site region 48154	1888 bp upstream
Tssr52739	transcription start site region 52739	990 bp downstream