rs33234117 SNP Detail

Summary

• ID
  rs33234117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75938600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCTGCTTC ACCACTCGAT TTTACCCCGG GAATGGACGT
  GATCTCTTAA ATCTAGACTA GGTGATGAGG ATGCCCTTTG ACCTTCGACA CCATGTCTCA
  Y
  CATTTCCTTT GCTCTTATCT CCATATGCAA ATGCCACAAG AAGTGTCTAT TCTTGGTGTT
  TTATTTACTT TGCCATGATG TCAGTTTGTG GCTTGAGCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45253800	mCV23800673	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss146770362	ENSMUSSNP3332498	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320352698	CHEV_2_75946313	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33234117					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75938600 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559651	regulatory region 559651	1398 bp proximal