rs33234912 SNP Detail

Summary

• ID
  rs33234912
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:116728990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTT AGAATGCTTG TATTGAACAC
  Y
  GGCTGAGCTG AGTTCATGTC TTGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45754009	mCV24902571	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					T		C
ss51804026	NES14719117	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	C	T	C	C		T	C	C	C
ss149139033	ENSMUSSNP5191764	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33234912					SNP	T	T	T	T	T	T	T	T	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51804026	NES14719117	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:116728990 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16401	CpG island 16401	74 bp proximal
Rr618510	regulatory region 618510	1652 bp distal
Rr618511	regulatory region 618511	542 bp distal
Rr618512	regulatory region 618512	876 bp proximal
Srrm4	serine/arginine repetitive matrix 4	Intron
Tssr52867	transcription start site region 52867	541 bp downstream
Tssr52868	transcription start site region 52868	851 bp downstream
Tssr52869	transcription start site region 52869	880 bp downstream
Tssr52870	transcription start site region 52870	927 bp downstream