rs33235332 SNP Detail

Summary

• ID
  rs33235332
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57311218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCT GCACAGGGCA GATAAGGACC
  R
  TAAGCAGAGA CCCCAGACAG AGCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39511051	mCV23457629	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss145809261	ENSMUSSNP3590072	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33235332					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57311218 () rs orientation: forward

Symbol	Name	Function Class
Gtf2f1	general transcription factor IIF, polypeptide 1	within coordinates
Tssr148848	transcription start site region 148848	200 bp downstream
Tssr148849	transcription start site region 148849	472 bp downstream
Tssr148850	transcription start site region 148850	592 bp downstream
Tssr148851	transcription start site region 148851	646 bp downstream
Tssr148852	transcription start site region 148852	1231 bp downstream