rs33235769 SNP Detail

Summary

• ID
  rs33235769
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122295545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGGCAGC TAGCCTGCGA
  GGCAGCAGAG TTGGGGACCC CTCAGGTGAA GGGGTGCCCC TGGGGAGTCA AGGAAGCTAG
  AGGCAAGCAG CAGATGAATG CGCTGAGGCC CAGAGCGCAC GCACAGCAAC CTCCCAGGAA
  ATGTGCAAAT TCCCATTTTA TCTGCTCCGG CACGCTCATT CAACCCAGCT CCGGCTAAAT
  M
  CAGGGGAAAT CTCTTAAATT ATTATATAAC TTTCTGAGTT CAAGAAAGAT AATTCAAAAG
  ATAGGTAGTA GCAACCCTTA CAGAATTCTC CCAACCTCTC TCTAAAATGT AAAAGAGCAT
  TAGCGCACAC AAGAAGCTCA CACAAATTAC TTAATGTGCC ACTCACAGTG GATTAACATT
  TTTTTGGCTT ATCTTGGGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45754313	mCV22536773	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
ss321668905	CHEV_5_122607491	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33235769					SNP	C	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122295545 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16545	CpG island 16545	266 bp proximal
Gm73495	predicted gene, 73495	within coordinates
Ppp1cc	protein phosphatase 1 catalytic subunit gamma	796 bp upstream
Rr124301	regulatory region 124301	within coordinates
Tssr48638	transcription start site region 48638	783 bp upstream