rs33235926 SNP Detail

Summary

• ID
  rs33235926
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:89364059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATC ACTATCATAC CAAGAACACA
  Y
  ATATCCATAA GAATTTGGTT TTGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46251112	mCV24087124	ABI	CRAMUS_MOUSE	f	SNP		T	C		C		T
ss60646306	NES16265270	PERLEGEN	MM_PANEL2	f	SNP	T		C	C		C	T	T	T		C	T	T	C
ss145481243	ENSMUSSNP4760042	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C				T
ss322766270	CHEV_8_91161330	CHEVERUD	SCREENING_POP	f	SNP										T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs33235926					SNP	T	T	C	C	C	C	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60646306	NES16265270	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:89364059 () rs orientation: forward

Symbol	Name	Function Class
Rr187078	regulatory region 187078	1058 bp distal
Rr382438	regulatory region 382438	within coordinates
Snx20	sorting nexin 20	1303 bp upstream
Tssr82357	transcription start site region 82357	1444 bp upstream
Tssr82358	transcription start site region 82358	1315 bp upstream
Tssr82359	transcription start site region 82359	1299 bp upstream
Tssr82360	transcription start site region 82360	1268 bp upstream